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ba1e466f

Commit ba1e466f authored 9 years ago by GEOFFREY CHARLES BILLY

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Merge branch 'master' into 'master'

Add the bam_to_scidx tool.

See merge request !13

parents a901390c 9b21a38e

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tools/bam_to_scidx/.shed.yml 13 additions, 0 deletions

tools/bam_to_scidx/.shed.yml
tools/bam_to_scidx/BAMtoIDX.jar 0 additions, 0 deletions

tools/bam_to_scidx/BAMtoIDX.jar
tools/bam_to_scidx/bam_to_scidx.py 69 additions, 0 deletions

tools/bam_to_scidx/bam_to_scidx.py
tools/bam_to_scidx/bam_to_scidx.xml 50 additions, 0 deletions

tools/bam_to_scidx/bam_to_scidx.xml
tools/bam_to_scidx/test-data/input.bam 0 additions, 0 deletions

tools/bam_to_scidx/test-data/input.bam
tools/bam_to_scidx/test-data/output.scidx 21 additions, 0 deletions

tools/bam_to_scidx/test-data/output.scidx
tools/cwpair2/cwpair2.py 0 additions, 2 deletions

tools/cwpair2/cwpair2.py
tools/cwpair2/cwpair2.xml 0 additions, 7 deletions

tools/cwpair2/cwpair2.xml
tools/cwpair2/cwpair2_util.py 3 additions, 19 deletions

tools/cwpair2/cwpair2_util.py
tools/genetrack/genetrack_util.py 5 additions, 52 deletions

tools/genetrack/genetrack_util.py

with 161 additions and 80 deletions

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