<paramname="sigma"type="integer"value="5"min="1"label="Sigma to use when smoothing reads to call peaks"help="Higher values increase computation but produce more smoothing."/>
<paramname="exclusion"type="integer"value="20"min="1"label="Peak exclusion zone"help="Exclusion zone around each peak that prevents others from being called."/>
<paramname="up_width"type="integer"value="0"min="0"label="Upstream width of called peaks"/>
<paramname="down_width"type="integer"value="0"min="0"label="Downstream width of called peaks"/>
<paramname="filter"type="integer"value="1"min="0"label="Absolute read filter"help="Removes peaks with lower peak height."/>
<paramname="chunk_size"type="integer"value="10"min="1"label="Chunk each chromosome into"help="Value is millions of base pairs where each size increment uses about 20MB of memory."/>
<conditionalname="threshold_format_cond">
<paramname="threshold_format"type="select"label="Format of the threshold of filtering pairs">