Next round of code cleanup for the genetrack tool.
Changes in this commit:
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Incorporated the few functions from chrtrans.py into genetrack.py to eliminate the dependency.
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Cleaned up the genetrack.py code to meet pep8 standards.
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Added a tool_dependencies.xml file in preparation for uploading to the Tool Shed.
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Did a bit of cleaning in the Genetrack config.
When loaded into Galaxy, this version of the tool will produce the same output as the original genetrack.py script.
More work is needed on this version of the tool though to get it production-ready.